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February 25, 2017

Now Online: Full Single Cell Subtype Analysis Workflow

Today we published our first release of the FASTGenomics platform. You can now access our first prototype at Choose one of eight recent data sets to explore the functionality. Right now, the prototype offers you a full pipeline for subtype discovery in single cell transcriptomics data.

  • Among others, you will find tools for
  • an interactive data quality assurance screen, including a simple tool for batch effect analysis
  • t-SNE-embedding powered by deep neural networks
  • clustering with HDBSCAN
  • 3D-exploration of t-SNE-embedding for insights into clustering confidence
  • differential gene expression with generalized linear models
  • gene set enrichment analysis using GO
  • comprehensive scientific summary of all methods and results

FASTGenomics is available as a free online tool now. Try it out now!